The EEMH are for sure a selling point for Star Wars fans. If it's just MF you're looking to ride, you could always try end of night, or else just suck it up and wait in the long line once. Yes, it will be a long wait, but it's only one ride.I have booked a room at Pop and at Universal Endless Summer for 1 week. Staying at Endless Summer would save me 400 dollar. I don't really need the 60 day fastpass but I am worried about getting into Star Wars land and riding the Millenium Falcon if I stay at Universal and can't use the EMH.
Alternately, have you considered a split stay? Do one night at Pop, which would give you 2 days of EEMH, and do Universal for the rest of your trip.
Also, I'm going to assume you've factored in associated costs, but just to be sure, are you sure you've got everything included? Remember that when staying at Universal, you have to pay to park at their hotels as well as at the Disney parks. If you won't have a car, you'll pay to Uber at least twice per day (more if you want any kind of break from the park), and you'll need to get to and from MCO on your own if you fly in.
Finally, are you actually going to the Universal parks this trip? If not, you can probably find accommodation that is both cheaper and closer to Disney.